species:   Scscl
pid:       PID1705
parent:    Ssc-milR-181
paralog:   
locus:     NW_001820832.1:1559730-1559826
matures:   ['UUUAAGGACGACUUUUCUUGAA', 'AAGAAAAAAAGUUAUUGAACG']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820832.1:1559730-1559826

26 out of bounds
44 alignments
8 proper strand
5 stranded perfect matches

           ***********************                             ***********************           
AGUGAAGGGACUCAAGAAAAAAAGUUAUUGAACGCCGUGGAUCGUGUUAUUGAGAAUUCACCUAUUUUAAGGACGACUUUUCUUGAAGUUCAAGACC
.((....(((((((((((((...(((.(((((....((((((..(.......)..))))))....))))).)))...)))))))).)))))...)).
-----------------------------------------------------------------UUUAAGGACGACUUUUCUUGAA---------- l=22 a=1 c
-------------AAGAAAAAAAGUUAUUGAACG--------------------------------------------------------------- l=21 a=0 c*
-----------------------------------------------------------------UUUAAGGACGACUUUUCUUGA----------- l=21 a=2 ma
-------------AAGAAAAAAAGUUAUUGAACG--------------------------------------------------------------- l=21 a=0 ma*

------------------------------------------------------------------UUAAGGACGACcUUUCUUGAAG--------- l=22 a=1 
------------------------------------------------------------------UUAAGGACGACUUUUCUUGAAG--------- l=22 a=1 
-----------------------------------------------------------------UUUAAGGACGACUUUUCUUGA----------- l=21 a=2 (ma)
-----------------------------------------------------------------UUUAAGGACGACUUUUCUUGAA---------- l=22 a=1 (c)
----------------------------------------------------------------UUUUAAGGACGACUUUUg--------------- l=18 a=1 
--------------------------------------------------------------UAUUUUAAGGACGACUUUUCUU------------- l=22 a=1 
--UGAuGGGACUCAAGAAAAAAAG------------------------------------------------------------------------- l=22 a=1 

mb-01011
ax-1001011
ku-01
ss-111111001100
fn-101
